“All great ideas begin with a github page”
The Projects
BioSyntax: Parsing biological file formats for humans with syntax highlighting
Project 4: Metrics to evaluate microbiome diversity
Develop an interactive Shiny app to guide the selection of metrics for alpha- and beta- diversity, in microbiome analysis
Project 7 (cancelled): Multi-locus typing
Improving multi-locus sequence typing software
Project 2: DNA methylation in single cells
A reproducible template workflow for single-cell DNA methylation data
Project 5: R for genomic analysis
Developing advanced R tutorials for genomic data analysis
Project 8: Guide RNAs and CRISPR
Analysis of tested guide RNA’s used for gene editing via CRISPR to predict optimal future guide sequences
Project 3: Gene Fusions in Cancer
Project 6: Quality Control of 10x Genomics Linked-Reads
Project 9: Expanding CollapseTree in R
Using the CollapseTree package with taxonomic metadata to automatically collapse large tree branches
hackseq is open to everyone with coding experience. The focus is on empowering students and trainees who want to use their skills and knowledge in a creative new way.
Based on the NCBI Hackathons